PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010545873.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 503aa    MW: 55924.6 Da    PI: 8.282
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010545873.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.44.1e-11329374555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h + Er+RR+++N++f+ Lr+llP+      +K +Ka++L  A e + sLq
  XP_010545873.1 329 HMISERKRREKLNESFQALRSLLPPG-----TKKDKASVLAGAREQLASLQ 374
                     8899********************97.....79**********99998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.773324373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-15326391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.00E-11326377No hitNo description
Gene3DG3DSA:4.10.280.108.9E-15328391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-8329374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.8E-12330379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MDAAFMADDP NTRSQIFGSL MQSFGCVYVC LWSYFPRPSN YLISLDGYYN EAPEEPSTSS  60
ASLVRRLFDE YRQTVIPLED GRVPGMAFAK NRPYVELRPP EILRLACNVA QRLFYHEAKI  120
RTVVFMGCRS GEIELGMTYD AAQMKIEAGL REWFPEDFQR KSPIQSEYPL PPPPSSSSSS  180
LRSLDSPNIS EYSSLLFPVT VTVNPSTTLL TETVNPPLVP ITTSMIQEGQ QSLHAIRQRE  240
EEAMTRAILA VLSAPSSPPS TSSSPKKLKP RVSAFKRYFS GSGSGGGGSV NLRKQTSMTK  300
RAIAFYGRLN VLRRERLVLG GPTATQLHHM ISERKRREKL NESFQALRSL LPPGTKKDKA  360
SVLAGAREQL ASLQSEVTRL SSRARELEAE LTGESEIESL QPGERFSVRT RQVPESTSRE  420
RTVDLRVVLS GENVSVDDLV IRLLEFLKPI TNVSLVSVEA QIRTEEGGDS SSVVASLRLK  480
IEGEWDESAF QEAVKRVIAD LAH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1332337ERKRRE
2333338RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010545873.10.0PREDICTED: putative transcription factor bHLH041
SwissprotQ9LTS41e-154BH041_ARATH; Putative transcription factor bHLH041
TrEMBLA0A078G7U10.0A0A078G7U1_BRANA; BnaA02g08430D protein
STRINGAT5G56960.11e-152(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70602840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.11e-138bHLH family protein